Fitness effects estimated from observed versus predicted counts as predicted by a general linear model.
Analysis described in Haddox H.K. et al. (2024).
Interactive plots for gisaid_2024-04-24 dataset:
Heatmaps of effects of mutations
Correlations among effect estimates
See Haddox H.K. et al. (2024) for a paper describing the work.
See https://github.com/neherlab/SARS2-mut-fitness-v2 for full computer code, data and a short summary of the theoretical framework.
See https://neherlab.github.io/SARS2-mut-fitness-v2/ for links to all interactive plots.